Daylight
Copyright Notice
This document and the programs described herein are Copyright
© 1992-2001, Daylight Chemical Information Systems, Inc., Mission
Viejo, CA. Daylight explicitly grants permission to reproduce this document
under the condition that it is reproduced in its entirety including this
notice, and without alteration. All other rights are reserved.
- 1.1 Create a Daylight Owner and Directory
- 1.2 Load Archive via HTTP/CDROM
- 1.3 Obtain a License File
- 1.4 Basic System Configuration
- 1.5 *THOR and Merlin
- 1.6 *Installing Databases
- 1.7 *Upgrading 4.6 Databases to 4.71
- 1.8 *JavaGrins and Dayutilserver
- 1.9 *DayCGI
- 1.10 *Contrib Directory
- 1.11 *Remote Toolkit / Daytoolserver
- 1.12 Setting Up User Accounts
- 1.13 Patch Installation Instructions
2.1 Introduction to Options
2.2 Defining and Customizing Options
2.3 #if / #else / #endif
3.1 What is a THOR Database?
3.2 Identifiers and Data
3.3 The THOR Data Tree
3.4 SMILES in THOR
3.5 Identifiers3.6. Datatypes, Datatrees, Dataitems, and Datafields
- 3.5.1 The Information Richness of Identifiers
- 3.5.2 "Fuzziness" in Identifiers
- 3.5.3 Choosing Identifiers
- 3.5.4 Standardizing Identifiers
3.7. Datatypes 3.9. Indirect Data
4.1 Four database types
4.2 Database files
4.3 The description file
4.4 The lockfile
4.5 The data and hash-table files
5.1 Configurations
5.2 The Server
5.3 The Client
5.4 List of Current Servers and Clients Applications
6.1 THOR system 6.2 Database Caching(NEW section)
6.3 Starting Server6.4 Multiple Servers
- 6.3.1. Method 1: Run server in an existing window.
- 6.3.2. Method 2: Server in "background" with logfile.
- 6.3.3. Auto-loading databases
6.5 Stopping Server
6.6 Sending Messages to Users
6.7 Monitoring and Maintenance
7.1 Merlin system7.2 Starting Server
- 7.1.1 Introduction
- 7.1.2 What makes Merlin so fast?
- 7.1.3 Merlin Clients and Servers
- 7.1.4 Merlin Pools
- 7.1.5 Columns and Cells
- 7.1.6 Column-creation functions
- 7.1.7 Hitlists
7.3 Multi-CPU parallel processing
- 7.2.1 Method 1: Run server in an existing window.
- 7.2.2 Method 2: Server in "background" with logfile.
- 7.2.3 Auto-loading databases
7.4 Multiple Servers
7.5 Stopping Server
7.6 Sending Messages to Users
7.7 Monitoring and Maintenance
8.1 Security and the Operating System
8.2 Security and the Network
8.3 Server Security 8.4 Database Security
9.1 Introduction 9.2 Database Creation and Maintenance9.3. Record Locking
- 9.2.1. Database creation
- 9.2.2. Database creation sizes
- 9.2.3. Database loading
- 9.2.4. Database dumping
- 9.2.5. File Ownership and Privileges
- 9.2.6. Moving databases
- 9.2.7. Using multiple disks
- 9.2.8. Backup and Restore
9.4. Read-Only Thor Databases
10.1 Memory Usage
10.2 Loading a Merlin Pool
10.3 Columns and Cells
10.4 Column-creation functions
11.1. What is sthorman?
11.2. Starting sthorman 11.3. Navigating in sthorman
11.4. sthorman Functionality 11.5. Batch processing
12.1. Introduction to Thorfilters 12.2. Entering Database and Server Names
12.3. "Generic" Thorfilters Options
12.4. Thorfilter Programs
- 12.4.1. dayevict
- 12.4.2. daymessage
- 12.4.3. tdtcat
- 12.4.4. tdtcount
- 12.4.5. thorcrunch
- 12.4.6. thordbping and merlindbping
- 12.4.7. thordelete
- 12.4.8. thordestroy
- 12.4.9. thordiff
- 12.4.10. thordump
- 12.4.11. thorlist
- 12.4.12. thorload
- 12.4.13. thorlookup
- 12.4.14. thorls and merlinls
- 12.4.15. thormake and thorchange
- 12.4.16. thorping and merlinping
- 12.4.17. thorwho and merlinwho
- 12.4.18. merlinload
13.1. Single-User Installation
13.2. Database-Server Installation
13.3. Multi-User Installation
JavaGrins/Dayutilserver Installation/Administration
Development with JavaGrins
A.1.1 SGI Irix 6.4 and Higher
A.1.2 SUN Solaris 2.6 and Higher
A.1.3 SUN Solaris 2.5
A.1.4 Red Hat Linux 6.1
A.1.5 What is my THOR and MERLIN database file size limit?
Daylight Chemical Information Systems, Inc.